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Species belonging to selected taxon:

Populus trichocarpa



ABOUT THIS RECORD

ID: MNEST041374
species: Populus trichocarpa
miRNA family: MIR169_3
source: miRBase, original name: ptc-MIR169t (MI0002270)

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GAGCCAAGAATGACTTGCCGG

miRNA*
GCCAGGTTGTTCTTGGCTCTA

mismatches: 3
bulges: 0

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pre-miRNA
CTAGAGTCCGAGCCAAGAATGACTTGCCGGCAGGCTAGCATTTGCTAGCTACAGGGCAAGATGTATGCTAAAGTGACATTCCGCCAGGTTGTTCTTGGCT
CTA
CTTTG


dot-bracket secondary structure
.((((((..((((((((((..(((((.(((..(((((((....)))))))....((((.......))))...........))).)))))..)))))))))
).)
)))))



SIMILARITIES
miRBase ptc-MIR169aa: 4e-19

PMRD ptc-miR169t: 1e-56

microPC miR169: 0.0003
UniProt no hits

RFAM MIR169_2: 2e-55

Identical with: ptc-miR169t from PMRD (MNEST051677)

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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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references

[1] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"




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